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clonal_decomposition [2018/10/18 16:21]
admin [Publications]
clonal_decomposition [2018/10/19 21:39] (current)
admin [Publications]
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 ====== Clonal decomposition ====== ====== Clonal decomposition ======
 ===== Publications ===== ===== Publications =====
-Zare, Habil, et al. "​Inferring Clonal Composition from Multiple Sections of a Breast Cancer."​ //​[[http://​www.ploscompbiol.org/​article/​info%3Adoi%2F10.1371%2Fjournal.pcbi.1003703|PLoS computational biology]]// 10.7 (2014): e1003703.\\ ​ Alexander Gelfand, Cancer'​s [[https://​en.wikipedia.org/​wiki/​Tumour_heterogeneity|heterogeneity]]:​ Modeling Tumors’ Diversity, //​Biomedical Computation [[http://​biomedicalcomputationreview.org/​sites/​default/​files/​15winch4.pdf|Review]]//​ 2015.\\ ​\\ + 
 +Zare, Habil, et al. "​Inferring Clonal Composition from Multiple Sections of a Breast Cancer."​ //​[[http://​www.ploscompbiol.org/​article/​info%3Adoi%2F10.1371%2Fjournal.pcbi.1003703|PLoS computational biology]]// 10.7 (2014): e1003703.\\ 
 +Alexander Gelfand, Cancer'​s [[https://​en.wikipedia.org/​wiki/​Tumour_heterogeneity|heterogeneity]]:​ Modeling Tumors’ Diversity, //​Biomedical Computation [[http://​biomedicalcomputationreview.org/​sites/​default/​files/​15winch4.pdf|Review]]//​2015.\\ 
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 ===== Software ===== ===== Software =====
 [[http://​www.bioconductor.org/​packages/​devel/​bioc/​html/​Clomial.html|Clomial]] is an R package for fitting binomial distributions data obtained from Next Gen. Sequencing of multiple samples from the same tumor. The trained parameters can be interpreted to infer the clonal structure of the tumor. The package includes the data from the breast tumor that we analyzed in the corresponding publication.\\ \\  [[http://​www.bioconductor.org/​packages/​devel/​bioc/​html/​Clomial.html|Clomial]] is an R package for fitting binomial distributions data obtained from Next Gen. Sequencing of multiple samples from the same tumor. The trained parameters can be interpreted to infer the clonal structure of the tumor. The package includes the data from the breast tumor that we analyzed in the corresponding publication.\\ \\