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how_to [2019/02/21 15:07] – [Install R locally (e.g. on a cluster)?] adminhow_to [2019/07/03 16:24] – [Install R locally (e.g. on a cluster)?] admin
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-**Get familiar with applications of machine learning in genetics and genomics?** \\ +**Get familiar with machine learning and its applications in computational biology? ** \\ 
-First read [[http://www.nature.com/nrg/journal/v16/n6/abs/nrg3920.html|this]] 2015 review paper and then follow its references.+- Most common ML techniques are very well explained in [[https://scikit-learn.org/stable/user_guide.html|Scikit learn]] with [[https://scikit-learn.org/stable/modules/decomposition.html|illustrations]] and example Python code. These techniques have been implemented in [[https://www.kaggle.com/getting-started/5243|R]] packages including mlr3 and tidymodels. 
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 +-[[http://www.nature.com/nrg/journal/v16/n6/abs/nrg3920.html|This]] 2015 paper reviews applications of ML in genetics and genomics. Read it and follow its references.
  
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-javascript:void(location.href=%22http://libproxy.txstate.edu/login?url=%22+location.href)+javascript:void(location.href=%22http://libproxy.uthscsa.edu/login?url=%22+location.href)
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 **Write a scientific paper?** \\ **Write a scientific paper?** \\
-Put the figures together and then [[http://www.scidev.net/global/publishing/practical-guide/how-do-i-write-a-scientific-paper-.html|draft]] different [[https://www.nature.com/articles/nmeth.4532?WT.ec_id=NMETH-201712&spMailingID=55474826&spUserID=MTIyMzczNjc4MDI2S0&spJobID=1285409878&spReportId=MTI4NTQwOTg3OAS2|sections]]. Focus the [[http://www.grantcentral.com/strategies-for-avoiding-common-problems-with-research-manuscripts/|Discussion]].+Put the figures together and then [[http://www.scidev.net/global/publishing/practical-guide/how-do-i-write-a-scientific-paper-.html|draft]] different [[https://www.nature.com/articles/nmeth.4532?WT.ec_id=NMETH-201712&spMailingID=55474826&spUserID=MTIyMzczNjc4MDI2S0&spJobID=1285409878&spReportId=MTI4NTQwOTg3OAS2|sections]]. Focus the [[http://www.grantcentral.com/strategies-for-avoiding-common-problems-with-research-manuscripts/|Discussion]]. Be careful about [[http://colah.github.io/posts/2019-05-Collaboration/index.html|authorship]].
  
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 **Rescue US biomedical research from its systemic flaws?** \\ **Rescue US biomedical research from its systemic flaws?** \\
-[[http://www.pnas.org/content/111/16/5773|Hypercompetition]] has damaging effects. Reduce the number of PhD students and postdocs. Revise funding mechanisms to encourage "path-breaking ideas that, by definition," are risky. Support [[https://nexus.od.nih.gov/all/2018/05/04/the-issue-that-keeps-us-awake-at-night/|early]]-stage investigators.+[[http://www.pnas.org/content/111/16/5773|Hypercompetition]] has damaging effects. Reduce the number of PhD students and postdocs. Revise funding mechanisms to encourage "path-breaking ideas that, by definition," are [[https://www.nature.com/articles/426389a|risky]]. Support [[https://nexus.od.nih.gov/all/2018/05/04/the-issue-that-keeps-us-awake-at-night/|early]]-stage investigators.
  
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 {{:screen_shot_2019-02-12_at_12.38.39_pm.png?linkonly|Set}} the link type to "internal media", click on "Browse Server", and then on "Choose File" and "Update". {{:screen_shot_2019-02-12_at_12.38.39_pm.png?linkonly|Set}} the link type to "internal media", click on "Browse Server", and then on "Choose File" and "Update".
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 +==== Aks people's opinion? ====
 +
 +Create a [[https://doodle.com/|Doodle]] to find a common time for scheduling events. For longer surveys, use [[https://www.surveymonkey.com/|SurveyMonkey]] for offline, and [[https://www.pollev.com/|Poll]] Everywhere for online interaction with audiance.