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how_to [2019/10/18 20:50] – [Access a Bioconductor package source code?] adminhow_to [2019/10/20 20:05] – [Access a Bioconductor package source code?] admin
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 ==== Access a Bioconductor package source code? ==== ==== Access a Bioconductor package source code? ====
  
-It is always better to a install the latest version of a package as directed in the corresponding Bioconductor page (e.g., [[https://bioconductor.org/packages/Pigengene|Pigengene]]). If you need to see more details in the source code, you can clone the source from the Bioconductor mirror, e.g.,+It is always better to a install the latest version of a package as directed in the corresponding Bioconductor page (e.g., [[https://bioconductor.org/packages/Pigengene|Pigengene]]). If you need to see more details in the source code, or you need the development version, you can clone the source from the Bioconductor using the "Source Repository (Developer Access) " command, which is posted on the corresponding package [[https://bioconductor.org/packages/release/bioc/html/Pigengene.html|page]], e.g.,
  
 <code> <code>
 mkdir ~/proj; cd ~/proj mkdir ~/proj; cd ~/proj
 git clone git@git.bioconductor.org:packages/Pigengene git clone git@git.bioconductor.org:packages/Pigengene
 +</code>
 +
 +Now, you can build the package fom the source using:
 +
 +<code>
 +R CMD REMOVE Pigengene; R CMD build Pigengene
 +</code>
 +
 +If the build is successful, a tarbal will be created. You can install the new package using:
 +
 +<code>
 + R CMD INSTALL Pigengene_<Version>.tar.gz
 </code> </code>