Both sides previous revisionPrevious revisionNext revision | Previous revisionNext revisionBoth sides next revision |
oncinfo [2018/11/16 22:09] – [Computational resources] admin | oncinfo [2019/07/04 01:34] – [List of projects] admin |
---|
| |
---- | ---- |
| |
| |
===== Current and former lab members ===== | ===== Current and former lab members ===== |
{{:wiki:public:cave2017.jpg?direct&600|cave2017.jpg}}[[:cave_2017|Cave 2017]] | {{:wiki:public:cave2017.jpg?direct&600|cave2017.jpg}}[[:cave_2017|Cave 2017]] |
| |
- [[http://uthscsa.edu/csa/faculty/Zare.asp|Dr. Habil Zare]] (the PI, {{:wiki:public:cv_habil_zare.pdf|CV}}, lab [[:habils_lab_notebook|notebook]]) | - [[http://uthscsa.edu/csa/faculty/Zare.asp|Dr. Habil Zare]] (the PI, {{:wiki:public:cv_habil_zare_1.pdf|CV}}, lab [[:habils_lab_notebook|notebook]]) |
- [[:shuvabrata_saha|Shuvabrata Saha]] (graduate student, left in 2014) | - [[:shuvabrata_saha|Shuvabrata Saha]] (graduate student, left in 2014) |
- [[:rupesh_agrahari|Rupesh Agrahari]] (graduate student, graduated in 2016, Update: Software Developer at Crossvale Inc in Dallas) | - [[:rupesh_agrahari|Rupesh Agrahari]] (graduate student, graduated in 2016, Update: Software Developer at Crossvale Inc in Dallas) |
- [[:aamirzainulabadeen|Aamir ]][[:aamirzainulabadeen|Zainulabadeen]] (Visiting undergraduate student in summers 2016 and 2017 from Princeton University) | - [[:aamirzainulabadeen|Aamir ]][[:aamirzainulabadeen|Zainulabadeen]] (Visiting undergraduate student in summers 2016 and 2017 from Princeton University) |
- [[:philip_yao|Philip Yao]] (Visiting undergraduate student in summer 2016 from the University of Michigan) | - [[:philip_yao|Philip Yao]] (Visiting undergraduate student in summer 2016 from the University of Michigan) |
- [[:hanie_samimi|Hanie Samimi]] (graduate student) | - [[:hanie_samimi|Hanie Samimi]] (graduate student, graduated in 2018. Update: PhD student at Texas State University) |
- [[:bryan_shaw|Bryan Shaw]] (graduate student) | - [[:bryan_shaw|Bryan Shaw]] (graduate student, left in 2017) |
- [[:gabriel_hurtado|Gabriel Hurtado]] (undergraduate student) | - [[:gabriel_hurtado|Gabriel Hurtado]] (undergraduate student 2016-2017) |
- [[:allison_yang|Allison Yang]] (2017 Summer [[http://www.txstate.edu/mathworks/camps/Summer-Math-Camps-Information/hsmc.html|Camp]] high school student) | - [[:allison_yang|Allison Yang]] (2017 Summer [[http://www.txstate.edu/mathworks/camps/Summer-Math-Camps-Information/hsmc.html|Camp]] high school student) |
- [[:angela_zhang|Angela Zhang]] (2017 Summer Camp high school student) | - [[:angela_zhang|Angela Zhang]] (2017 Summer Camp high school student) |
- [[:shilpita_mitra-behura|Shilpita Mitra-Behura]] (2017 Summer Camp high school student) | - [[:shilpita_mitra-behura|Shilpita Mitra-Behura]] (2017 Summer Camp high school student) |
- [[:ghazal_ebrahimi|Ghazal Ebrahimi ]](Visiting undergraduate student from Sharif University in summer 2018) | - [[:ghazal_ebrahimi|Ghazal Ebrahimi ]](Volunteer undergraduate student from Sharif University) |
| - [[:isha_mehta|Isha Mehta]] (Postdoctoral Associate) |
| - [[:meghan_short|Meghan Short]] (Guest postdoc) |
| |
---- | ---- |
| |
| |
===== Open positions ===== | ===== Open positions ===== |
| |
Research assistantship and postdoctoral opportunities are available in the Oncinfo Lab. See [[https://jobs.sciencecareers.org/job/486328/research-positions-in-computational-biology-at-all-levels-postdoctoral-phd-and-ms-students/?TrackID=148656|this]] [{{:wiki:public:recruit_oncinfo_2018.pdf|pdf]}} advertisement for more details on the postdoctoral position, and also if you are interested in joining the lab as a graduate student. There are also some opportunities to apply for postdoctoral fellowship [[:postdoctorial_fellowship_awards|awards]]. Taking an [[:r_test|R test]] is essential in the interview process. | Research assistantship and postdoctoral opportunities are available in the Oncinfo Lab. See the [[https://jobs.sciencecareers.org/job/486328/research-positions-in-computational-biology-at-all-levels-postdoctoral-phd-and-ms-students/?TrackID=148656|2018]] [{{:wiki:public:recruit_oncinfo_2018.pdf|pdf]}} and [[https://jobs.sciencecareers.org/job/498929/computational-biologist-interested-in-neurodegenerative-disorders-and-cancer-research/?TrackID=9|2019]] [{{:wiki:public:approved.pdf|pdf}} ] advertisements for more details on the postdoctoral position, and also if you are interested in joining the lab as a graduate student. PhD applicants must be strong in machine learning and knowledgeable in molecular biology to be successful in multidisciplinary research as illustrated in our exemplar[[:machine_learning_and_molecular_biology_requirements| papers]]. There are also some opportunities to apply for postdoctoral fellowship [[:postdoctorial_fellowship_awards|awards]]. Taking an [[:r_test|R test]] is essential in the interview process. |
| |
---- | ---- |
| |
| |
===== Computational resources ===== | ===== Computational resources ===== |
| |
To run our //in silico// experiments, we use resources provided by The Texas Advanced Computing Center ([[https://www.tacc.utexas.edu/|TACC]]) e.g., [[https://www.tacc.utexas.edu/systems/lonestar|Lonestar]] , which is a computing system with over 30,00 cores, and [[https://www.tacc.utexas.edu/systems/stampede|Stampede]], which is one of the 10 top supercomputers in the world with 10 petaFLOPS dedicated to scientific research. We have also access to NSF-supported [[https://portal.xsede.org|XSEDE]] recourses. | To run our //in silico// experiments, we use resources provided by The Texas Advanced Computing Center ([[https://www.tacc.utexas.edu/|TACC]]) e.g., [[https://www.tacc.utexas.edu/systems/lonestar|Lonestar]] , which is a computing system with over 30,00 cores, and [[https://www.tacc.utexas.edu/systems/stampede|Stampede]], which is one of the 10 top supercomputers in the world with 10 petaFLOPS dedicated to scientific research. We have also access to NSF-supported [[https://portal.xsede.org|XSEDE]] recourses including [[https://portal.xsede.org/jetstream|Jetstream]]. |
| |
---- | ---- |
===== Educational services ===== | ===== Educational services ===== |
| |
The "[[:bioinformatics_for_biologist_workshop|Bioinformatics for biologist workshop]]" is a practical introduction to some basic bioinformatics tools for audience with little computational skills. Slides are available from the workshop page. Additional resources are listed at "How to begin [[:how_to|learning]] bioinformatics?" Please feel free to use and contribute to our [[:how_to|How to]] page, which is a list of miscellaneous solutions for data analysis and other challenges in computational biology.\\ | The "[[:bioinformatics_for_biologist_workshop|Bioinformatics for biologist workshop]]" is a practical introduction to some basic bioinformatics tools for audience with little computational skills. Slides are available from the workshop page. Additional resources are listed at "How to begin [[:how_to|learning]] bioinformatics?" |
| |
| ==== How to ==== |
| |
| Please feel free to use and contribute to our [[:how_to|How to]] page, which is a list of miscellaneous solutions for data analysis and other challenges in computational biology.\\ |
\\ | \\ |
[[:for_members|For members]] | [[:for_members|For members]] |