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oncinfo [2019/07/29 15:16] – [List of projects] admin | oncinfo [2019/12/18 21:34] – [List of projects] admin |
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- [[:clonal_decomposition|Clonal decomposition]] | - [[:clonal_decomposition|Clonal decomposition]] |
- [[:hepatocellular_carcinoma|Hepatocellular carcinoma]] | - [[:hepatocellular_carcinoma|Hepatocellular carcinoma]] |
- [[:molecular_mechanisms_ofalzheimers_disease|Molecular mechanisms of Alzheimer's disease]] | - [[:molecular_mechanisms_ofalzheimers_disease|Molecular mechanisms of Alzheimer's disease]] |
| - [[:somatic_insertions_of_transposons_in_tauopathies|Somatic insertions of transposons in tauopathies]] |
- [[:genome_evolution|Genome evolution]] | - [[:genome_evolution|Genome evolution]] |
- [[:multiomics_analysis_for_dementia|Multiomics analysis for dementia]] | - [[:multiomics_analysis_for_dementia|Multiomics analysis for dementia]] |
- [[:Rapamycin|Rapamycin effects on aging-associated pathologies]] | - [[:serum_biomarkers_for_neurodegeneration|Serum biomarkers for neurodegeneration ]] |
| - [[:rapamycin|Rapamycin effects on aging-associated pathologies]] |
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===== Current and former lab members ===== | ===== Current and former lab members ===== |
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{{:wiki:public:cave2017.jpg?direct&600|cave2017.jpg}}[[:cave_2017|Cave 2017]] | {{:wiki:public:20191113_115359-cut.jpg?nolink&2072x1901|20191113_115359-cut.jpg}} |
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- [[http://uthscsa.edu/csa/faculty/Zare.asp|Dr. Habil Zare]] (the PI, {{:wiki:public:cv_habil_zare_1.pdf|CV}}, lab [[:habils_lab_notebook|notebook]]) | Photos: [[:lost_maple_2019|Lost Maples 2019]], [[:cave_2017|Cave 2017]] |
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| - [[https://www.uthscsa.edu/academics/biomedical-sciences/faculty/profile/65296/Zare,-Habil|Dr. Habil Zare]] (the PI, {{:wiki:public:cv_habil_zare_1.pdf|CV}}, lab [[:habils_lab_notebook|notebook]]) |
- [[:shuvabrata_saha|Shuvabrata Saha]] (graduate student, left in 2014) | - [[:shuvabrata_saha|Shuvabrata Saha]] (graduate student, left in 2014) |
- [[:rupesh_agrahari|Rupesh Agrahari]] (graduate student, graduated in 2016, Update: Software Developer at Crossvale Inc in Dallas) | - [[:rupesh_agrahari|Rupesh Agrahari]] (graduate student, graduated in 2016, Update: Software Developer at Crossvale Inc in Dallas) |
- [[:isha_mehta|Isha Mehta]] (Postdoctoral Associate) | - [[:isha_mehta|Isha Mehta]] (Postdoctoral Associate) |
- [[:meghan_short|Meghan Short]] (Guest postdoc) | - [[:meghan_short|Meghan Short]] (Guest postdoc) |
| - [[:shiva_kazempour|Shiva Kazempour]] (Visiting Scientist since 2019). |
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===== Open positions ===== | ===== Open positions ===== |
===== Computational resources ===== | ===== Computational resources ===== |
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To run our //in silico// experiments, we use resources provided by The Texas Advanced Computing Center ([[https://www.tacc.utexas.edu/|TACC]]) e.g., [[https://www.tacc.utexas.edu/systems/lonestar|Lonestar]] , which is a computing system with over 30,00 cores, and [[https://www.tacc.utexas.edu/systems/stampede|Stampede]], which is one of the 10 top supercomputers in the world with 10 petaFLOPS dedicated to scientific research. We have also access to NSF-supported [[https://portal.xsede.org|XSEDE]] recourses including [[https://portal.xsede.org/jetstream|Jetstream]]. | To run our //in silico// experiments, we use several [[https://docs.google.com/document/d/1vP0MSHRQ9oMjnv02eiqrOY0cs0WaVxp5dyLjiWtSzrQ/edit|resources]] provided by The Texas Advanced Computing Center ([[https://www.tacc.utexas.edu/|TACC]]) e.g., [[https://www.tacc.utexas.edu/systems/lonestar|Lonestar]] , which is a computing system with over 30,00 cores, and [[https://www.tacc.utexas.edu/systems/stampede|Stampede]], which is one of the 10 top supercomputers in the world with 10 petaFLOPS dedicated to scientific research. We have also access to NSF-supported [[https://portal.xsede.org|XSEDE]] recourses including [[https://portal.xsede.org/jetstream|Jetstream]]. |
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===== Educational services ===== | ===== Educational services ===== |
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The "[[:bioinformatics_for_biologist_workshop|Bioinformatics for biologist workshop]]" is a practical introduction to some basic bioinformatics tools for audience with little computational skills. Slides are available from the workshop page. Additional resources are listed at "How to begin [[:how_to|learning]] bioinformatics?" | - The "[[:bioinformatics_for_biologist_workshop|Bioinformatics for biologist workshop]]" is a practical introduction to some basic bioinformatics tools for audience with little computational skills. Slides are available from the workshop page. Additional resources are listed at "How to begin [[:how_to|learning]] bioinformatics?" |
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| - The [[https://docs.google.com/presentation/d/1El0rxBw8lRBCf0nhqLqaXBOTWE20o1G7k4huXX150Wo/edit#slide=id.g63f2c216dd_0_0|Slides]] for Habil's hands-on workshop in the 2019 Neurepiomics [[https://biggsinstitute.org/events/neurepiomics/|Course]]. |
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==== How to ==== | ==== How to ==== |