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| oncinfo [2019/07/03 15:34] – [Educational services] admin | oncinfo [2019/09/03 21:17] – [Current and former lab members] admin |
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| - [[:genome_evolution|Genome evolution]] | - [[:genome_evolution|Genome evolution]] |
| - [[:multiomics_analysis_for_dementia|Multiomics analysis for dementia]] | - [[:multiomics_analysis_for_dementia|Multiomics analysis for dementia]] |
| | - [[:Rapamycin|Rapamycin effects on aging-associated pathologies]] |
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| ===== Current and former lab members ===== | ===== Current and former lab members ===== |
| {{:wiki:public:cave2017.jpg?direct&600|cave2017.jpg}}[[:cave_2017|Cave 2017]] | {{:wiki:public:cave2017.jpg?direct&600|cave2017.jpg}}[[:cave_2017|Cave 2017]] |
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| - [[http://uthscsa.edu/csa/faculty/Zare.asp|Dr. Habil Zare]] (the PI, {{:wiki:public:cv_habil_zare_1.pdf|CV}}, lab [[:habils_lab_notebook|notebook]]) | - [[https://www.uthscsa.edu/academics/biomedical-sciences/faculty/profile/65296/Zare,-Habil|Dr. Habil Zare]] (the PI, {{:wiki:public:cv_habil_zare_1.pdf|CV}}, lab [[:habils_lab_notebook|notebook]]) |
| - [[:shuvabrata_saha|Shuvabrata Saha]] (graduate student, left in 2014) | - [[:shuvabrata_saha|Shuvabrata Saha]] (graduate student, left in 2014) |
| - [[:rupesh_agrahari|Rupesh Agrahari]] (graduate student, graduated in 2016, Update: Software Developer at Crossvale Inc in Dallas) | - [[:rupesh_agrahari|Rupesh Agrahari]] (graduate student, graduated in 2016, Update: Software Developer at Crossvale Inc in Dallas) |
| - [[:isha_mehta|Isha Mehta]] (Postdoctoral Associate) | - [[:isha_mehta|Isha Mehta]] (Postdoctoral Associate) |
| - [[:meghan_short|Meghan Short]] (Guest postdoc) | - [[:meghan_short|Meghan Short]] (Guest postdoc) |
| | - [[:shiva_kazempour|Shiva Kazempour]] (Visiting Scientist since 2019). |
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| ===== Open positions ===== | ===== Open positions ===== |
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| Research assistantship and postdoctoral opportunities are available in the Oncinfo Lab. See the [[https://jobs.sciencecareers.org/job/486328/research-positions-in-computational-biology-at-all-levels-postdoctoral-phd-and-ms-students/?TrackID=148656|2018]] [{{:wiki:public:recruit_oncinfo_2018.pdf|pdf]}} and [[https://jobs.sciencecareers.org/job/498929/computational-biologist-interested-in-neurodegenerative-disorders-and-cancer-research/?TrackID=9|2019]] [{{:wiki:public:approved.pdf|pdf}} ] advertisements for more details on the postdoctoral position, and also if you are interested in joining the lab as a graduate student. PhD applicants must be strong in machine learning and knowledgeable in molecular biology to be successful in multidisciplinary research as illustrated in our exemplar[[:machine_learning_and_molecular_biology_requirements| papers]]. There are also some opportunities to apply for postdoctoral fellowship [[:postdoctorial_fellowship_awards|awards]]. Taking an [[:r_test|R test]] is essential in the interview process. | Research assistantship and postdoctoral opportunities are available in the Oncinfo Lab. See the [[https://jobs.sciencecareers.org/job/486328/research-positions-in-computational-biology-at-all-levels-postdoctoral-phd-and-ms-students/?TrackID=148656|2018]] [{{:wiki:public:recruit_oncinfo_2018.pdf|pdf]}} and [[https://jobs.sciencecareers.org/job/498929/computational-biologist-interested-in-neurodegenerative-disorders-and-cancer-research/?TrackID=9|2019]] [{{:wiki:public:approved.pdf|pdf}} ] advertisements for more details on the postdoctoral position, and also if you are interested in joining the lab as a graduate student. PhD applicants must be strong in machine learning and knowledgeable in molecular biology to be successful in multidisciplinary research as illustrated in our exemplar[[:machine_learning_and_molecular_biology_requirements| papers]]. Even if the application deadline is passed, strong applicants with a masters degree may start //immediately// as a visiting scientist with possibility of joining the PhD program within a year. There are also some opportunities to apply for postdoctoral fellowship [[:postdoctorial_fellowship_awards|awards]]. Taking an [[:r_test|R test]] is essential in the interview process. |
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| ===== Computational resources ===== | ===== Computational resources ===== |
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| To run our //in silico// experiments, we use resources provided by The Texas Advanced Computing Center ([[https://www.tacc.utexas.edu/|TACC]]) e.g., [[https://www.tacc.utexas.edu/systems/lonestar|Lonestar]] , which is a computing system with over 30,00 cores, and [[https://www.tacc.utexas.edu/systems/stampede|Stampede]], which is one of the 10 top supercomputers in the world with 10 petaFLOPS dedicated to scientific research. We have also access to NSF-supported [[https://portal.xsede.org|XSEDE]] recourses including [[https://portal.xsede.org/jetstream|Jetstream]]. | To run our //in silico// experiments, we use resources provided by The Texas Advanced Computing Center ([[https://www.tacc.utexas.edu/|TACC]]) e.g., [[https://www.tacc.utexas.edu/systems/lonestar|Lonestar]] , which is a computing system with over 30,00 cores, and [[https://www.tacc.utexas.edu/systems/stampede|Stampede]], which is one of the 10 top supercomputers in the world with 10 petaFLOPS dedicated to scientific research. We have also access to NSF-supported [[https://portal.xsede.org|XSEDE]] recourses including [[https://portal.xsede.org/jetstream|Jetstream]]. |
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| ===== Educational services ===== | ===== Educational services ===== |
| ==== How to ==== | ==== How to ==== |
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| Please feel free to use and contribute to our [[:how_to|How to]] page, which is a list of miscellaneous solutions for data analysis and other challenges in computational biology.\\ | Please feel free to use and contribute to our [[:how_to|How to]] page, which is a list of miscellaneous solutions for data analysis and other challenges in computational biology. \\ \\ [[:for_members|For members]] |
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| [[:for_members|For members]] | |
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