Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revision
Previous revision
Next revisionBoth sides next revision
oncinfo [2019/07/04 04:34] adminoncinfo [2019/11/14 04:53] – [Current and former lab members] admin
Line 14: Line 14:
   - [[:genome_evolution|Genome evolution]]   - [[:genome_evolution|Genome evolution]]
   - [[:multiomics_analysis_for_dementia|Multiomics analysis for dementia]]   - [[:multiomics_analysis_for_dementia|Multiomics analysis for dementia]]
 +  - [[:Rapamycin|Rapamycin effects on aging-associated pathologies]]
  
 ---- ----
 +
  
 ===== Current and former lab members ===== ===== Current and former lab members =====
  
-{{:wiki:public:cave2017.jpg?direct&600|cave2017.jpg}}[[:cave_2017|Cave 2017]]+{{:wiki:public:20191113_115359-cut.jpg?nolink&2072x1901}} 
 + 
 +[[:lost_maple_2019|Lost Maples 2019]], [[:cave_2017|Cave 2017]]
  
-  - [[http://uthscsa.edu/csa/faculty/Zare.asp|Dr. Habil Zare]] (the PI, {{:wiki:public:cv_habil_zare_1.pdf|CV}}, lab [[:habils_lab_notebook|notebook]])+  - [[https://www.uthscsa.edu/academics/biomedical-sciences/faculty/profile/65296/Zare,-Habil|Dr. Habil Zare]] (the PI, {{:wiki:public:cv_habil_zare_1.pdf|CV}}, lab [[:habils_lab_notebook|notebook]])
   - [[:shuvabrata_saha|Shuvabrata Saha]] (graduate student, left in 2014)   - [[:shuvabrata_saha|Shuvabrata Saha]] (graduate student, left in 2014)
   - [[:rupesh_agrahari|Rupesh Agrahari]] (graduate student, graduated in 2016, Update: Software Developer at Crossvale Inc in Dallas)   - [[:rupesh_agrahari|Rupesh Agrahari]] (graduate student, graduated in 2016, Update: Software Developer at Crossvale Inc in Dallas)
Line 38: Line 42:
   - [[:isha_mehta|Isha Mehta]] (Postdoctoral Associate)   - [[:isha_mehta|Isha Mehta]] (Postdoctoral Associate)
   - [[:meghan_short|Meghan Short]] (Guest postdoc)   - [[:meghan_short|Meghan Short]] (Guest postdoc)
 +  - [[:shiva_kazempour|Shiva Kazempour]] (Visiting Scientist since 2019).
  
 ---- ----
 +
  
 ===== Open positions ===== ===== Open positions =====
  
-Research assistantship and postdoctoral opportunities are available in the Oncinfo Lab. See the [[https://jobs.sciencecareers.org/job/486328/research-positions-in-computational-biology-at-all-levels-postdoctoral-phd-and-ms-students/?TrackID=148656|2018]] [{{:wiki:public:recruit_oncinfo_2018.pdf|pdf]}}  and [[https://jobs.sciencecareers.org/job/498929/computational-biologist-interested-in-neurodegenerative-disorders-and-cancer-research/?TrackID=9|2019]] [{{:wiki:public:approved.pdf|pdf}}  ] advertisements for more details on the postdoctoral position, and also if you are interested in joining the lab as a graduate student. PhD applicants must be strong in machine learning and knowledgeable in molecular biology to be successful in multidisciplinary research as illustrated  in our exemplar[[:machine_learning_and_molecular_biology_requirements| papers]]. There are also some opportunities to apply for postdoctoral fellowship [[:postdoctorial_fellowship_awards|awards]]. Taking an [[:r_test|R test]] is essential in the interview process.+Research assistantship and postdoctoral opportunities are available in the Oncinfo Lab. See the [[https://jobs.sciencecareers.org/job/486328/research-positions-in-computational-biology-at-all-levels-postdoctoral-phd-and-ms-students/?TrackID=148656|2018]] [{{:wiki:public:recruit_oncinfo_2018.pdf|pdf]}}  and [[https://jobs.sciencecareers.org/job/498929/computational-biologist-interested-in-neurodegenerative-disorders-and-cancer-research/?TrackID=9|2019]] [{{:wiki:public:approved.pdf|pdf}}  ] advertisements for more details on the postdoctoral position, and also if you are interested in joining the lab as a graduate student. PhD applicants must be strong in machine learning and knowledgeable in molecular biology to be successful in multidisciplinary research as illustrated in our exemplar[[:machine_learning_and_molecular_biology_requirements| papers]]. Even if the application deadline is passed, strong applicants with a masters degree may start //immediately// as a visiting scientist with possibility of joining the PhD program within a year. There are also some opportunities to apply for postdoctoral fellowship [[:postdoctorial_fellowship_awards|awards]]. Taking an [[:r_test|R test]] is essential in the interview process.
  
 ---- ----
 +
  
 ===== Computational resources ===== ===== Computational resources =====
  
-To run our //in silico//  experiments, we use resources provided by The Texas Advanced Computing Center ([[https://www.tacc.utexas.edu/|TACC]]) e.g., [[https://www.tacc.utexas.edu/systems/lonestar|Lonestar]] , which is a computing system with over 30,00 cores, and [[https://www.tacc.utexas.edu/systems/stampede|Stampede]], which is one of the 10 top supercomputers in the world with 10 petaFLOPS dedicated to scientific research. We have also access to NSF-supported ​[[https://portal.xsede.org|XSEDE]] recourses including [[https://portal.xsede.org/jetstream|Jetstream]].+To run our //in silico// experiments, we use several [[https://docs.google.com/document/d/1vP0MSHRQ9oMjnv02eiqrOY0cs0WaVxp5dyLjiWtSzrQ/edit|resources]] provided by The Texas Advanced Computing Center ([[https://www.tacc.utexas.edu/|TACC]]) e.g., [[https://www.tacc.utexas.edu/systems/lonestar|Lonestar]] , which is a computing system with over 30,00 cores, and [[https://www.tacc.utexas.edu/systems/stampede|Stampede]], which is one of the 10 top supercomputers in the world with 10 petaFLOPS dedicated to scientific research. We have also access to NSF-supported ​[[https://portal.xsede.org|XSEDE]] recourses including [[https://portal.xsede.org/jetstream|Jetstream]].
  
 ---- ----
 +
  
 ===== Educational services ===== ===== Educational services =====
  
-The "[[:bioinformatics_for_biologist_workshop|Bioinformatics for biologist workshop]]" is a practical introduction to some basic bioinformatics tools for audience with little computational skills. Slides are available from the workshop page. Additional resources are listed at "How to begin [[:how_to|learning]] bioinformatics?"+The "[[:bioinformatics_for_biologist_workshop|Bioinformatics for biologist workshop]]" is a practical introduction to some basic bioinformatics tools for audience with little computational skills. Slides are available from the workshop page. Additional resources are listed at "How to begin [[:how_to|learning]] bioinformatics?" 
 + 
 +- The [[https://docs.google.com/presentation/d/1El0rxBw8lRBCf0nhqLqaXBOTWE20o1G7k4huXX150Wo/edit#slide=id.g63f2c216dd_0_0|Slides]] for Habil's hands-on workshop in the 2019 Neurepiomics [[https://biggsinstitute.org/events/neurepiomics/|Course]]. 
  
 ==== How to ==== ==== How to ====