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oncinfo [2019/10/15 20:31] – [Computational resources] adminoncinfo [2020/01/18 16:08] – [Computational resources] admin
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   - [[:clonal_decomposition|Clonal decomposition]]   - [[:clonal_decomposition|Clonal decomposition]]
   - [[:hepatocellular_carcinoma|Hepatocellular carcinoma]]   - [[:hepatocellular_carcinoma|Hepatocellular carcinoma]]
-  - [[:molecular_mechanisms_ofalzheimers_disease|Molecular mechanisms of Alzheimer's disease]]+  -  [[:molecular_mechanisms_ofalzheimers_disease|Molecular mechanisms of Alzheimer's disease]] 
 +      - [[:somatic_insertions_of_transposons_in_tauopathies|Somatic insertions of transposons in tauopathies]]
   - [[:genome_evolution|Genome evolution]]   - [[:genome_evolution|Genome evolution]]
   - [[:multiomics_analysis_for_dementia|Multiomics analysis for dementia]]   - [[:multiomics_analysis_for_dementia|Multiomics analysis for dementia]]
-  - [[:Rapamycin|Rapamycin effects on aging-associated pathologies]]+  - [[:serum_biomarkers_for_neurodegeneration|Serum biomarkers for neurodegeneration ]] 
 +  - [[:rapamycin|Rapamycin effects on aging-associated pathologies]]
  
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 ===== Current and former lab members ===== ===== Current and former lab members =====
  
-{{:wiki:public:cave2017.jpg?direct&600|cave2017.jpg}}[[:cave_2017|Cave 2017]]+{{:wiki:public:20191113_115359-cut.jpg?nolink&2072x1901|20191113_115359-cut.jpg}} 
 + 
 +Photos: [[:lost_maple_2019|Lost Maples 2019]], [[:cave_2017|Cave 2017]]
  
   - [[https://www.uthscsa.edu/academics/biomedical-sciences/faculty/profile/65296/Zare,-Habil|Dr. Habil Zare]] (the PI, {{:wiki:public:cv_habil_zare_1.pdf|CV}}, lab [[:habils_lab_notebook|notebook]])   - [[https://www.uthscsa.edu/academics/biomedical-sciences/faculty/profile/65296/Zare,-Habil|Dr. Habil Zare]] (the PI, {{:wiki:public:cv_habil_zare_1.pdf|CV}}, lab [[:habils_lab_notebook|notebook]])
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 ===== Computational resources ===== ===== Computational resources =====
  
-To run our //in silico// experiments, we use several [[https://docs.google.com/document/d/1vP0MSHRQ9oMjnv02eiqrOY0cs0WaVxp5dyLjiWtSzrQ/edit|resources]] provided by The Texas Advanced Computing Center ([[https://www.tacc.utexas.edu/|TACC]]) e.g., [[https://www.tacc.utexas.edu/systems/lonestar|Lonestar]] , which is a computing system with over 30,00 cores, and [[https://www.tacc.utexas.edu/systems/stampede|Stampede]], which is one of the 10 top supercomputers in the world with 10 petaFLOPS dedicated to scientific research. We have also access to NSF-supported ​[[https://portal.xsede.org|XSEDE]] recourses including [[https://portal.xsede.org/jetstream|Jetstream]].+To run our //in silico// experiments, we use several [[https://docs.google.com/document/d/1vP0MSHRQ9oMjnv02eiqrOY0cs0WaVxp5dyLjiWtSzrQ/edit|resources]] provided by The Texas Advanced Computing Center ([[https://www.tacc.utexas.edu/|TACC]]) e.g., [[https://www.tacc.utexas.edu/systems/lonestar|Lonestar]] , which is a computing system with over 30,00 cores, and [[https://www.tacc.utexas.edu/systems/stampede|Stampede]], which is one of the 10 top supercomputers in the world with 10 petaFLOPS dedicated to scientific research. Secure HEPA compliant resources at TACC include [[https://www.tacc.utexas.edu/systems/hikari|Hikari]], which has 10K cores and is connected to [[https://www.tacc.utexas.edu/systems/corral|Corral]] with a capacity of 15 PBs. We have also access to NSF-supported ​[[https://portal.xsede.org|XSEDE]] recourses including [[https://portal.xsede.org/jetstream|Jetstream]].
  
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 ===== Educational services ===== ===== Educational services =====
  
-The "[[:bioinformatics_for_biologist_workshop|Bioinformatics for biologist workshop]]" is a practical introduction to some basic bioinformatics tools for audience with little computational skills. Slides are available from the workshop page. Additional resources are listed at "How to begin [[:how_to|learning]] bioinformatics?"+- The "[[:bioinformatics_for_biologist_workshop|Bioinformatics for biologist workshop]]" is a practical introduction to some basic bioinformatics tools for audience with little computational skills. Slides are available from the workshop page. Additional resources are listed at "How to begin [[:how_to|learning]] bioinformatics?" 
 + 
 +- The [[https://docs.google.com/presentation/d/1El0rxBw8lRBCf0nhqLqaXBOTWE20o1G7k4huXX150Wo/edit#slide=id.g63f2c216dd_0_0|Slides]] for Habil's hands-on workshop in the 2019 Neurepiomics [[https://biggsinstitute.org/events/neurepiomics/|Course]]. 
  
 ==== How to ==== ==== How to ====