Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revision		Previous revision
Next revisionBoth sides next revision
oncinfo [2019/10/23 22:34] – [Educational services] adminoncinfo [2020/04/21 15:07] – [Current and former lab members] admin
Line 11: Line 11:
   - [[:clonal_decomposition|Clonal decomposition]]   - [[:clonal_decomposition|Clonal decomposition]]
   - [[:hepatocellular_carcinoma|Hepatocellular carcinoma]]   - [[:hepatocellular_carcinoma|Hepatocellular carcinoma]]
-  - [[:molecular_mechanisms_ofalzheimers_disease|Molecular mechanisms of Alzheimer's disease]]+  -  [[:molecular_mechanisms_ofalzheimers_disease|Molecular mechanisms of Alzheimer's disease]] 
 +      - [[:somatic_insertions_of_transposons_in_tauopathies|Somatic insertions of transposons in tauopathies]]
   - [[:genome_evolution|Genome evolution]]   - [[:genome_evolution|Genome evolution]]
   - [[:multiomics_analysis_for_dementia|Multiomics analysis for dementia]]   - [[:multiomics_analysis_for_dementia|Multiomics analysis for dementia]]
-  - [[:Rapamycin|Rapamycin effects on aging-associated pathologies]]+  - [[:serum_biomarkers_for_neurodegeneration|Serum biomarkers for neurodegeneration ]] 
 +  - [[:rapamycin|Rapamycin effects on aging-associated pathologies]]
  
 ---- ----
Line 21: Line 23:
 ===== Current and former lab members ===== ===== Current and former lab members =====
  
-{{:wiki:public:cave2017.jpg?direct&600|cave2017.jpg}}[[:cave_2017|Cave 2017]]+{{:wiki:public:20191113_115359-cut.jpg?nolink&2072x1901|20191113_115359-cut.jpg}} 
 + 
 +Photos: [[:lost_maple_2019|Lost Maples 2019]], [[:cave_2017|Cave 2017]]
  
   - [[https://www.uthscsa.edu/academics/biomedical-sciences/faculty/profile/65296/Zare,-Habil|Dr. Habil Zare]] (the PI, {{:wiki:public:cv_habil_zare_1.pdf|CV}}, lab [[:habils_lab_notebook|notebook]])   - [[https://www.uthscsa.edu/academics/biomedical-sciences/faculty/profile/65296/Zare,-Habil|Dr. Habil Zare]] (the PI, {{:wiki:public:cv_habil_zare_1.pdf|CV}}, lab [[:habils_lab_notebook|notebook]])
   - [[:shuvabrata_saha|Shuvabrata Saha]] (graduate student, left in 2014)   - [[:shuvabrata_saha|Shuvabrata Saha]] (graduate student, left in 2014)
   - [[:rupesh_agrahari|Rupesh Agrahari]] (graduate student, graduated in 2016, Update: Software Developer at Crossvale Inc in Dallas)   - [[:rupesh_agrahari|Rupesh Agrahari]] (graduate student, graduated in 2016, Update: Software Developer at Crossvale Inc in Dallas)
-  - [[:amir_foroushani|Amir Foroushani]] (Postdoctoral Associate until 2016, Update: Computer Scientist at [[http://www.niaid.nih.gov/labsandresources/labs/aboutlabs/li/iiu/pages/default.aspx?wt.ac=bcIiu|Laboratory of Immunology]], NIAID, NIH)+  - Dr. [[:amir_foroushani|Amir Foroushani]] (Postdoctoral Associate until 2016, Update: Computer Scientist at [[http://www.niaid.nih.gov/labsandresources/labs/aboutlabs/li/iiu/pages/default.aspx?wt.ac=bcIiu|Laboratory of Immunology]], NIAID, NIH)
   - Vignesh Kuppa (volunteer graduate student, left in 2015)   - Vignesh Kuppa (volunteer graduate student, left in 2015)
   - [[:jessica_zavadil|Jessica Zavadil]] (MD/PhD student in Dr. Christi Walter's lab at UTHSCSA, graduated in 2016)   - [[:jessica_zavadil|Jessica Zavadil]] (MD/PhD student in Dr. Christi Walter's lab at UTHSCSA, graduated in 2016)
   - [[:aamirzainulabadeen|Aamir ]][[:aamirzainulabadeen|Zainulabadeen]] (Visiting undergraduate student in summers 2016 and 2017 from Princeton University)   - [[:aamirzainulabadeen|Aamir ]][[:aamirzainulabadeen|Zainulabadeen]] (Visiting undergraduate student in summers 2016 and 2017 from Princeton University)
-  - [[:philip_yao|Philip Yao]] (Visiting undergraduate student in summer 2016 from the University of Michigan)+  - [[:philip_yao|Philip Yao]] (Visiting undergraduate student in summer 2016 from the University of Michigan, software engineer at Amazon)
   - [[:hanie_samimi|Hanie Samimi]] (graduate student, graduated in 2018. Update: PhD student at Texas State University)   - [[:hanie_samimi|Hanie Samimi]] (graduate student, graduated in 2018. Update: PhD student at Texas State University)
   - [[:bryan_shaw|Bryan Shaw]] (graduate student, left in 2017)   - [[:bryan_shaw|Bryan Shaw]] (graduate student, left in 2017)
Line 37: Line 41:
   - [[:angela_zhang|Angela Zhang]] (2017 Summer Camp high school student)   - [[:angela_zhang|Angela Zhang]] (2017 Summer Camp high school student)
   - [[:shilpita_mitra-behura|Shilpita Mitra-Behura]] (2017 Summer Camp high school student)   - [[:shilpita_mitra-behura|Shilpita Mitra-Behura]] (2017 Summer Camp high school student)
-  - [[:ghazal_ebrahimi|Ghazal Ebrahimi ]](Volunteer undergraduate student from Sharif University) +  - [[:ghazal_ebrahimi|Ghazal Ebrahimi ]](Volunteer undergraduate student from Sharif University since 2018) 
-  - [[:isha_mehta|Isha Mehta]] (Postdoctoral Associate) +  - Dr. [[:isha_mehta|Isha Mehta]] (Postdoctoral Associate, since 2019) 
-  - [[:meghan_short|Meghan Short]] (Guest postdoc)+  - Dr. [[:meghan_short|Meghan Short]] (Postdoc Associate since 2019)
   - [[:shiva_kazempour|Shiva Kazempour]] (Visiting Scientist since 2019).   - [[:shiva_kazempour|Shiva Kazempour]] (Visiting Scientist since 2019).
 +  - Dr. [[:raheleh_roudi|Raheleh Roudi]] (Visiting Scientist since 2020).
 +
 +To help [[https://www.livescience.com/coronavirus-flatten-the-curve.html|flatten]] the COVID-19 curve, we have been working from home since mid March 2020. [[https://docs.google.com/document/d/1iCLinpkdAGRsRW_1u_QrPKbcc77_1Kl0CgdGP5UfKjI/edit#|This]] is the full list of the things we do to increase efficiency and to maintain mental health when working from home.  {{:ec.png?nolink&100x79}}test.
  
 ---- ----
Line 54: Line 61:
 ===== Computational resources ===== ===== Computational resources =====
  
-To run our //in silico// experiments, we use several [[https://docs.google.com/document/d/1vP0MSHRQ9oMjnv02eiqrOY0cs0WaVxp5dyLjiWtSzrQ/edit|resources]] provided by The Texas Advanced Computing Center ([[https://www.tacc.utexas.edu/|TACC]]) e.g., [[https://www.tacc.utexas.edu/systems/lonestar|Lonestar]] , which is a computing system with over 30,00 cores, and [[https://www.tacc.utexas.edu/systems/stampede|Stampede]], which is one of the 10 top supercomputers in the world with 10 petaFLOPS dedicated to scientific research. We have also access to NSF-supported ​[[https://portal.xsede.org|XSEDE]] recourses including [[https://portal.xsede.org/jetstream|Jetstream]].+To run our //in silico// experiments, we use several [[https://docs.google.com/document/d/1vP0MSHRQ9oMjnv02eiqrOY0cs0WaVxp5dyLjiWtSzrQ/edit|resources]] provided by The Texas Advanced Computing Center ([[https://www.tacc.utexas.edu/|TACC]]) e.g., [[https://www.tacc.utexas.edu/systems/lonestar|Lonestar]] , which is a computing system with over 30,00 cores, and [[https://www.tacc.utexas.edu/systems/stampede|Stampede]], which is one of the 10 top supercomputers in the world with 10 petaFLOPS dedicated to scientific research. Secure HEPA compliant resources at TACC include [[https://www.tacc.utexas.edu/systems/hikari|Hikari]], which has 10K cores and is connected to [[https://www.tacc.utexas.edu/systems/corral|Corral]] with a capacity of 15 PBs. We have also access to NSF-supported ​[[https://portal.xsede.org|XSEDE]] recourses including [[https://portal.xsede.org/jetstream|Jetstream]].
  
 ---- ----