Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision
Previous revision
oncinfo [2019/06/14 17:34]
admin [Current and former lab members]
oncinfo [2019/09/04 00:17] (current)
admin [Current and former lab members]
Line 14: Line 14:
   - [[:​genome_evolution|Genome evolution]]   - [[:​genome_evolution|Genome evolution]]
   - [[:​multiomics_analysis_for_dementia|Multiomics analysis for dementia]]   - [[:​multiomics_analysis_for_dementia|Multiomics analysis for dementia]]
 +  - [[:​Rapamycin|Rapamycin effects on aging-associated pathologies]]
  
 ---- ----
 +
  
 ===== Current and former lab members ===== ===== Current and former lab members =====
Line 21: Line 23:
 {{:​wiki:​public:​cave2017.jpg?​direct&​600|cave2017.jpg}}[[:​cave_2017|Cave 2017]] {{:​wiki:​public:​cave2017.jpg?​direct&​600|cave2017.jpg}}[[:​cave_2017|Cave 2017]]
  
-  - [[http://​uthscsa.edu/​csa/​faculty/​Zare.asp|Dr. Habil Zare]] (the PI, {{:​wiki:​public:​cv_habil_zare_1.pdf|CV}},​ lab [[:​habils_lab_notebook|notebook]])+  - [[https://www.uthscsa.edu/​academics/​biomedical-sciences/faculty/​profile/​65296/Zare,-Habil|Dr. Habil Zare]] (the PI, {{:​wiki:​public:​cv_habil_zare_1.pdf|CV}},​ lab [[:​habils_lab_notebook|notebook]])
   - [[:​shuvabrata_saha|Shuvabrata Saha]] (graduate student, left in 2014)   - [[:​shuvabrata_saha|Shuvabrata Saha]] (graduate student, left in 2014)
   - [[:​rupesh_agrahari|Rupesh Agrahari]] (graduate student, graduated in 2016, Update: Software Developer at Crossvale Inc in Dallas)   - [[:​rupesh_agrahari|Rupesh Agrahari]] (graduate student, graduated in 2016, Update: Software Developer at Crossvale Inc in Dallas)
Line 38: Line 40:
   - [[:​isha_mehta|Isha Mehta]] (Postdoctoral Associate)   - [[:​isha_mehta|Isha Mehta]] (Postdoctoral Associate)
   - [[:​meghan_short|Meghan Short]] (Guest postdoc)   - [[:​meghan_short|Meghan Short]] (Guest postdoc)
 +  - [[:​shiva_kazempour|Shiva Kazempour]] (Visiting Scientist since 2019).
  
 ---- ----
Line 44: Line 47:
 ===== Open positions ===== ===== Open positions =====
  
-Research assistantship and postdoctoral opportunities are available in the Oncinfo Lab. See the [[https://​jobs.sciencecareers.org/​job/​486328/​research-positions-in-computational-biology-at-all-levels-postdoctoral-phd-and-ms-students/?​TrackID=148656|2018]] [{{:​wiki:​public:​recruit_oncinfo_2018.pdf|pdf]}} ​ and [[https://​jobs.sciencecareers.org/​job/​498929/​computational-biologist-interested-in-neurodegenerative-disorders-and-cancer-research/?​TrackID=9|2019]] [{{:​wiki:​public:​approved.pdf|pdf}} ​ ] advertisements for more details on the postdoctoral position, and also if you are interested in joining the lab as a graduate student. PhD applicants must be strong in machine learning and knowledgeable in molecular biology to be successful in multidisciplinary research as illustrated ​ in our exemplar[[:​machine_learning_and_molecular_biology_requirements| papers]]. There are also some opportunities to apply for postdoctoral fellowship [[:​postdoctorial_fellowship_awards|awards]]. Taking an [[:r_test|R test]] is essential in the interview process.+Research assistantship and postdoctoral opportunities are available in the Oncinfo Lab. See the [[https://​jobs.sciencecareers.org/​job/​486328/​research-positions-in-computational-biology-at-all-levels-postdoctoral-phd-and-ms-students/?​TrackID=148656|2018]] [{{:​wiki:​public:​recruit_oncinfo_2018.pdf|pdf]}} ​ and [[https://​jobs.sciencecareers.org/​job/​498929/​computational-biologist-interested-in-neurodegenerative-disorders-and-cancer-research/?​TrackID=9|2019]] [{{:​wiki:​public:​approved.pdf|pdf}} ​ ] advertisements for more details on the postdoctoral position, and also if you are interested in joining the lab as a graduate student. PhD applicants must be strong in machine learning and knowledgeable in molecular biology to be successful in multidisciplinary research as illustrated in our exemplar[[:​machine_learning_and_molecular_biology_requirements| papers]]. Even if the application deadline is passed, strong applicants with a masters degree may start //​immediately//​ as a visiting scientist with possibility of joining the PhD program within a year. There are also some opportunities to apply for postdoctoral fellowship [[:​postdoctorial_fellowship_awards|awards]]. Taking an [[:r_test|R test]] is essential in the interview process.
  
 ---- ----
Line 51: Line 54:
 ===== Computational resources ===== ===== Computational resources =====
  
-To run our //in silico// experiments,​ we use resources provided by The Texas Advanced Computing Center ([[https://​www.tacc.utexas.edu/​|TACC]]) e.g., [[https://​www.tacc.utexas.edu/​systems/​lonestar|Lonestar]] , which is a computing system with over 30,00 cores, and [[https://​www.tacc.utexas.edu/​systems/​stampede|Stampede]],​ which is one of the 10 top supercomputers in the world with 10 petaFLOPS dedicated to scientific research. We have also access to NSF-supported ​[[https://​portal.xsede.org|XSEDE]] recourses including [[https://​portal.xsede.org/​jetstream|Jetstream]].+To run our //in silico// ​ experiments,​ we use resources provided by The Texas Advanced Computing Center ([[https://​www.tacc.utexas.edu/​|TACC]]) e.g., [[https://​www.tacc.utexas.edu/​systems/​lonestar|Lonestar]] , which is a computing system with over 30,00 cores, and [[https://​www.tacc.utexas.edu/​systems/​stampede|Stampede]],​ which is one of the 10 top supercomputers in the world with 10 petaFLOPS dedicated to scientific research. We have also access to NSF-supported ​[[https://​portal.xsede.org|XSEDE]] recourses including [[https://​portal.xsede.org/​jetstream|Jetstream]].
  
 ---- ----
- 
  
 ===== Educational services ===== ===== Educational services =====
  
-The "​[[:​bioinformatics_for_biologist_workshop|Bioinformatics for biologist workshop]]"​ is a practical introduction to some basic bioinformatics tools for audience with little computational skills. Slides are available from the workshop page. Additional resources are listed at "How to begin [[:​how_to|learning]] bioinformatics?"​ Please feel free to use and contribute to our [[:​how_to|How to]] page, which is a list of miscellaneous solutions for data analysis and other challenges in computational biology.\\ +The "​[[:​bioinformatics_for_biologist_workshop|Bioinformatics for biologist workshop]]"​ is a practical introduction to some basic bioinformatics tools for audience with little computational skills. Slides are available from the workshop page. Additional resources are listed at "How to begin [[:​how_to|learning]] bioinformatics?"​ 
-\\ + 
-[[:​for_members|For members]]+==== How to ==== 
 + 
 +Please feel free to use and contribute to our [[:​how_to|How to]] page, which is a list of miscellaneous solutions for data analysis and other challenges in computational biology. \\   ​\\  [[:​for_members|For members]]
  
 ---- ----