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oncinfo [2019/09/04 00:17]
admin [Current and former lab members]
oncinfo [2020/01/18 18:08] (current)
admin [Computational resources]
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   - [[:​clonal_decomposition|Clonal decomposition]]   - [[:​clonal_decomposition|Clonal decomposition]]
   - [[:​hepatocellular_carcinoma|Hepatocellular carcinoma]]   - [[:​hepatocellular_carcinoma|Hepatocellular carcinoma]]
-  - [[:​molecular_mechanisms_ofalzheimers_disease|Molecular mechanisms of Alzheimer'​s disease]]+  -  [[:​molecular_mechanisms_ofalzheimers_disease|Molecular mechanisms of Alzheimer'​s disease]] 
 +      - [[:​somatic_insertions_of_transposons_in_tauopathies|Somatic insertions of transposons in tauopathies]]
   - [[:​genome_evolution|Genome evolution]]   - [[:​genome_evolution|Genome evolution]]
   - [[:​multiomics_analysis_for_dementia|Multiomics analysis for dementia]]   - [[:​multiomics_analysis_for_dementia|Multiomics analysis for dementia]]
-  - [[:Rapamycin|Rapamycin effects on aging-associated pathologies]]+  - [[:serum_biomarkers_for_neurodegeneration|Serum biomarkers for neurodegeneration ]] 
 +  - [[:​rapamycin|Rapamycin effects on aging-associated pathologies]]
  
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 ===== Current and former lab members ===== ===== Current and former lab members =====
  
-{{:​wiki:​public:​cave2017.jpg?direct&600|cave2017.jpg}}[[:​cave_2017|Cave 2017]]+{{:​wiki:​public:​20191113_115359-cut.jpg?nolink&2072x1901|20191113_115359-cut.jpg}} 
 + 
 +Photos: [[:​lost_maple_2019|Lost Maples 2019]], ​[[:​cave_2017|Cave 2017]]
  
   - [[https://​www.uthscsa.edu/​academics/​biomedical-sciences/​faculty/​profile/​65296/​Zare,​-Habil|Dr. Habil Zare]] (the PI, {{:​wiki:​public:​cv_habil_zare_1.pdf|CV}},​ lab [[:​habils_lab_notebook|notebook]])   - [[https://​www.uthscsa.edu/​academics/​biomedical-sciences/​faculty/​profile/​65296/​Zare,​-Habil|Dr. Habil Zare]] (the PI, {{:​wiki:​public:​cv_habil_zare_1.pdf|CV}},​ lab [[:​habils_lab_notebook|notebook]])
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 ===== Computational resources ===== ===== Computational resources =====
  
-To run our //in silico// ​ experiments,​ we use resources provided by The Texas Advanced Computing Center ([[https://​www.tacc.utexas.edu/​|TACC]]) e.g., [[https://​www.tacc.utexas.edu/​systems/​lonestar|Lonestar]] , which is a computing system with over 30,00 cores, and [[https://​www.tacc.utexas.edu/​systems/​stampede|Stampede]],​ which is one of the 10 top supercomputers in the world with 10 petaFLOPS dedicated to scientific research. We have also access to NSF-supported ​[[https://​portal.xsede.org|XSEDE]] recourses including [[https://​portal.xsede.org/​jetstream|Jetstream]].+To run our //in silico// experiments,​ we use several [[https://​docs.google.com/​document/​d/​1vP0MSHRQ9oMjnv02eiqrOY0cs0WaVxp5dyLjiWtSzrQ/​edit|resources]] provided by The Texas Advanced Computing Center ([[https://​www.tacc.utexas.edu/​|TACC]]) e.g., [[https://​www.tacc.utexas.edu/​systems/​lonestar|Lonestar]] , which is a computing system with over 30,00 cores, and [[https://​www.tacc.utexas.edu/​systems/​stampede|Stampede]],​ which is one of the 10 top supercomputers in the world with 10 petaFLOPS dedicated to scientific research. Secure HEPA compliant resources at TACC include [[https://​www.tacc.utexas.edu/​systems/​hikari|Hikari]],​ which has 10K cores and is connected to [[https://​www.tacc.utexas.edu/​systems/​corral|Corral]] with a capacity of 15 PBs. We have also access to NSF-supported ​[[https://​portal.xsede.org|XSEDE]] recourses including [[https://​portal.xsede.org/​jetstream|Jetstream]].
  
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 ===== Educational services ===== ===== Educational services =====
  
-The "​[[:​bioinformatics_for_biologist_workshop|Bioinformatics for biologist workshop]]"​ is a practical introduction to some basic bioinformatics tools for audience with little computational skills. Slides are available from the workshop page. Additional resources are listed at "How to begin [[:​how_to|learning]] bioinformatics?"​+The "​[[:​bioinformatics_for_biologist_workshop|Bioinformatics for biologist workshop]]"​ is a practical introduction to some basic bioinformatics tools for audience with little computational skills. Slides are available from the workshop page. Additional resources are listed at "How to begin [[:​how_to|learning]] bioinformatics?"​ 
 + 
 +- The [[https://​docs.google.com/​presentation/​d/​1El0rxBw8lRBCf0nhqLqaXBOTWE20o1G7k4huXX150Wo/​edit#​slide=id.g63f2c216dd_0_0|Slides]] for Habil'​s hands-on workshop in the 2019 Neurepiomics [[https://​biggsinstitute.org/​events/​neurepiomics/​|Course]]. 
  
 ==== How to ==== ==== How to ====