# Differences

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 r_test [2020/01/30 17:29]admin [Question 1] r_test [2020/01/30 17:36] (current)admin [Question 1] Both sides previous revision Previous revision 2020/01/30 17:36 admin [Question 1] 2020/01/30 17:29 admin [Question 1] 2020/01/30 17:25 admin [Question 1] 2020/01/23 17:09 admin [Question 2:] 2020/01/23 17:07 admin [Question 2:] 2019/08/07 11:43 [Question 1] 2019/07/26 04:55 admin [Question 2:] 2019/07/12 03:19 admin [Question 2:] 2019/06/06 06:20 admin [Question 2:] 2019/05/22 07:50 admin [Question 2:] 2019/05/22 06:20 admin [Question 1] 2019/05/22 06:11 admin 2018/10/24 00:23 admin 2018/06/25 15:26 external edit 2020/01/30 17:36 admin [Question 1] 2020/01/30 17:29 admin [Question 1] 2020/01/30 17:25 admin [Question 1] 2020/01/23 17:09 admin [Question 2:] 2020/01/23 17:07 admin [Question 2:] 2019/08/07 11:43 [Question 1] 2019/07/26 04:55 admin [Question 2:] 2019/07/12 03:19 admin [Question 2:] 2019/06/06 06:20 admin [Question 2:] 2019/05/22 07:50 admin [Question 2:] 2019/05/22 06:20 admin [Question 1] 2019/05/22 06:11 admin 2018/10/24 00:23 admin 2018/06/25 15:26 external edit Line 25: Line 25: - Use pheatmap function to plot the expression of the top 5 DE genes. - Use pheatmap function to plot the expression of the top 5 DE genes. - \\ - **Deliverables**:​ Report the number of DE genes, de.csv file, your script, heatmap.png,​ and the approximate number of hours it took you to do the test. Additionally,​ write a short description of what you did in 5-10 sentences. The description should indicate your proficiency in English writing ​and your ability to communicate with a biologist ​who has little or no background in programming. \\ - You need to be able to orally explain all parts of your script including the above lines. Be prepared to explain the input, output, and process done by each function you use. \\ - If you are not familiar with gene expression and have little idea what limma does, try to learn the needed concept from the web, e.g., [[https://​en.wikipedia.org/​wiki/​Gene_expression|Wikipedia]]. You can use information from tutorials, books, papers, experts in the fields, your friends, etc., however, make sure you can explain your work thoroughly. \\ + \\ - **Deliverables**:​ Report the number of DE genes, de.csv file, your script, heatmap.png,​ and the approximate number of hours it took you to do the test. Additionally,​ write a short description of what you did in 5-10 sentences. The description should indicate your proficiency in English writing. To test your ability to communicate with a biologist ​__who has little or no background in programming__,​ write the summary of your results in a paragraph titled "​conclusion"​. \\ - You need to be able to orally explain all parts of your script including the above lines. Be prepared to explain the input, output, and process done by each function you use. \\ - If you are not familiar with gene expression and have little idea what limma does, try to learn the needed concept from the web, e.g., [[https://​en.wikipedia.org/​wiki/​Gene_expression|Wikipedia]]. You can use information from tutorials, books, papers, experts in the fields, your friends, etc., however, make sure you can explain your work thoroughly. \\ - Follow the suggested file formats on the members'​ [[https://​oncinfo.org/​for_members|page]]. - Follow the suggested file formats on the members'​ [[https://​oncinfo.org/​for_members|page]].