Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
useful_tools_for_functional_and_pathway_analysis [2019/10/31 18:40]
admin
useful_tools_for_functional_and_pathway_analysis [2020/04/22 21:09] (current)
isha [Useful tools for functional and pathway analysis]
Line 49: Line 49:
   * There are some [[https://​www.biostars.org/​p/​274514/​|R tools]] for pathway analysis including [[https://​yulab-smu.github.io/​clusterProfiler-book/​|ClusterProfiler]].   * There are some [[https://​www.biostars.org/​p/​274514/​|R tools]] for pathway analysis including [[https://​yulab-smu.github.io/​clusterProfiler-book/​|ClusterProfiler]].
   * Mouse Genome Informatics ([[http://​www.informatics.jax.org/​|MGI]]) has a nice hierarchal Gene Ontology [[http://​www.informatics.jax.org/​vocab/​gene_ontology|Browser]] similar to Reactome.   * Mouse Genome Informatics ([[http://​www.informatics.jax.org/​|MGI]]) has a nice hierarchal Gene Ontology [[http://​www.informatics.jax.org/​vocab/​gene_ontology|Browser]] similar to Reactome.
-  * Isha's list of [[https://​docs.google.com/​presentation/​d/​1c4HAcImyyU1as5qEwzmH8QIAxD25N4Z5__sUZE3n6kk/​edit#​slide=id.g6f90f06c9f_0_0|functional enrichment]] analysis tools in R.+  * Functional Enrichment Analysis [[https://​yulab-smu.github.io/​clusterProfiler-book/​chapter1.html|overview]]. ​Isha's list of [[https://​docs.google.com/​presentation/​d/​1c4HAcImyyU1as5qEwzmH8QIAxD25N4Z5__sUZE3n6kk/​edit#​slide=id.g6f90f06c9f_0_0|functional enrichment]] analysis tools in R. 
 +  * [[http://​gepia.cancer-pku.cn/​|GEPIA]] and [[http://​gepia2.cancer-pku.cn/#​index|GEPIA2]] are web based resources for interactive gene expression profiling and analysis. The data sources used are TCGA and GTEx. 
  
 ==== Reference: ==== ==== Reference: ====